Moments after Malek accepted the honour, the rest of the cast of the film also joined onstage as they accepted the Golden Globe for Best Motion Picture-Drama.
As Malek reached out to thank Kidman for the award, she promptly turned her back on him and very much left him hanging.
Malek, who won a Golden Globe for his portrayal of Queen frontman Freddie Mercury, then had to endure the slow-motion replay.
"What an honour. Thank you", he captioned the image after the Sunday night ceremony.
Bohemian Rhapsody went on to win Best Drama at the Golden Globes, beating out films like A Star is Born.
Bohemian Rhapsody, a box office hit despite mixed reviews from critics, had not been considered a top contender for Best Picture at February's Academy Awards. "This is for and because of you, gorgeous", Malek said, with a kiss.
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Ole said, "You know we're about winning trophies, of course, and the FA Cup final is such a fantastic final to play in". They have a process to look for the next manager but the more you're here the more you enjoy it.
"We have to say, I can do that, and I should be allowed to do that", the 71-year-old said, to huge applause from the gathering of A-list stars.
The show must go on, and it will go on for Golden Globe victor Bohemian Rhapsody.
The actor wound up dedicating his award to the man he played: The late, great Freddie Mercury.
The film is also being expanded from 1,000 theaters to more than 1,300 on Friday.
Civil rights dramedy "Green Book" was the numerical victor - if not the prestige player - picking up awards for best comedy movie, best supporting actor Mahershala Ali and best screenplay.
When asked if he knows how he's going to address the awkward mishap when he sees her at another gala during the long awards season, Malek coyly teased.